Class: VARNAConfig

VARNAConfig()

VARNAConfig defines the style of drawing

Constructor

new VARNAConfig()

Properties:
Name Type Description
layout string base layout (default: Layouts.RADIATE)
spaceBetweenBases int multiplier for base spacing
bpDistance int distance between paired bases (length of canonical basepair)
backboneLoop int backbone distance within a loop (radiate, turtle, puzzler)
backboneMultiLoop int backbone distance within a multiloop for radiate layout
baseNameColor string color of base name, i.e. nucleotide (default: rgb(64, 64, 64))
baseInnerColor string color to fill base (default: rgb(242, 242, 242))
baseOutlineColor string color of base border (default: rgb(91, 91, 91))
baseOutlineThickness float base border thickness (default: 1.5)
baseNumColor string color of base number (default: rgb(64, 64, 64))
baseNumPeriod int base number period. Non positive value means hiding base number (default: 10)
backboneColor string color of backbone (default: rgb(91, 91, 91))
backboneThickness int backbone thickness (default: 1)
bpColor string basepair color (default: blue)
bpThickness int basepair thickness (default: 1)
bpLowerPlane bool draw basepair in lower plane in linear layout (default: false)
drawBases bool base visibility (default: true)
drawBacbone bool backbone visibility (default: true)
puzzler Puzzler puzzler setting
Source:

Classes

VARNAConfig

Methods

backboneCyStyle(selector)

Create general cytoscape style for backbone
Parameters:
Name Type Default Description
selector string edge.bacbone backbone selector (default: "edge.backbone")
Source:

baseCyStyle(selector)

Create general cytoscape style for bases
Parameters:
Name Type Default Description
selector string node base selector (default: "node")
Source:

baseNameCyStyle(selector)

Create general cytoscape style for base names
Parameters:
Name Type Default Description
selector string node[label] base name selector (default: "node[label]")
Source:

bpCyStyle(selector)

Create general cytoscape style forbasepair
Parameters:
Name Type Default Description
selector string edge.bacbone basepair selector (default: "edge.basepair")
Source: