Members
(constant) BASEPAIR_COLOR_DEFAULT
Default basepair color
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(constant) BASEPAIR_THICKNESS_DEFAULT
Default basepair thickness
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(constant) BASE_INNER_COLOR_DEFAULT
Default inner base color
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(constant) BASE_NAME_COLOR_DEFAULT
Default base label color
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(constant) BASE_NUMBER_COLOR_DEFAULT
Default base number color
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(constant) BASE_OUTLINE_COLOR_DEFAULT
Default base outline color
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(constant) BASE_OUTLINE_THICKNESS_DEFAULT
Default base outline thickness
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(constant) Layouts
Enum for RNA base layout
Properties:
| Name | Type | Description |
|---|---|---|
LINE |
string | linear layout |
CIRCLE |
string | circular layout |
RADIATE |
string | radiate layout |
NAVIEW |
string | NAView layout |
TURTLE |
string | RNAturtle layout (Wiegreffe et al. 2018) |
PUZZLER |
string | RNApuzzler layout (Wiegreffe et al. 2018) |
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Methods
drawRNA(container, dbn, seq, varnaCfg)
Basic RNA draw function
Parameters:
| Name | Type | Description |
|---|---|---|
container |
Element | HTML element to draw RNA |
dbn |
string | RNA in dot-bracket notation (dbn) |
seq |
string | RNA sequence |
varnaCfg |
VARNAConfig | VARNA configuration to draw |
parseDBN(dbn) → {Array}
Simple dot-bracket notation parser
Parameters:
| Name | Type | Description |
|---|---|---|
dbn |
string | secondary structure in dbn |
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Returns:
An array of basepairs, each is an array of two integers
- Type
- Array